PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012409-PA
Common NameOsI_11134
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 150aa    MW: 16624.9 Da    PI: 10.7839
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012409-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.34.1e-082194270
          trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70
                      W++ e+ aL++a   ++ r   g l+ ++W++ ++++      ++   r+  qCk++++ l+kr k+++ +  +
  BGIOSGA012409-PA 21 WSDGETSALLDAWGPRNIRAAGGPLRTADWRACAAAVtarraVDGRAPRTVDQCKNRLDYLKKRLKAERSRLAG 94
                      *************************************98887778889*******************9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1320100No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MATRRRAAAP PQPPAWTPEP WSDGETSALL DAWGPRNIRA AGGPLRTADW RACAAAVTAR  60
RAVDGRAPRT VDQCKNRLDY LKKRLKAERS RLAGTYERVE VAKQKEATRL EERRLEAMRD  120
LEIERMRILV DVAISASAVA DTATAASSSW
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154524321e-146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370721e-144AC137072.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence.
GenBankAC2131301e-144AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence.
GenBankAP0149591e-144AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-144CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698074.15e-35PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA2XFJ61e-101A2XFJ6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA012409-PA1e-101(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140221313